Index

A

A_filter() (ABXpy.sideop.filter_manager.FilterManager method) ABX_filter() (ABXpy.sideop.filter_manager.FilterManager method) ABXpy.__init__ module ABXpy.analyze module ABXpy.database module ABXpy.database.database module ABXpy.dbfun module ABXpy.dbfun.dbfun module ABXpy.dbfun.dbfun_column module ABXpy.dbfun.dbfun_compute module ABXpy.dbfun.dbfun_lookuptable module ABXpy.dbfun.lookuptable_connector module ABXpy.distances module ABXpy.distances.distances module ABXpy.distances.metrics module ABXpy.distances.metrics.cosine module ABXpy.h5tools module ABXpy.h5tools.h52np module ABXpy.h5tools.h5_handler module

ABXpy.h5tools.h5io module ABXpy.h5tools.np2h5 module ABXpy.misc module ABXpy.misc.progress_display module ABXpy.misc.tinytree module ABXpy.misc.type_fitting module ABXpy.sampling module ABXpy.sampling.sampler module ABXpy.score module ABXpy.sideop module ABXpy.sideop.filter_manager module ABXpy.sideop.regressor_manager module ABXpy.sideop.side_operations_manager module ABXpy.task module add() (ABXpy.misc.progress_display.ProgressDisplay method) (ABXpy.sideop.side_operations_manager.SideOperationsManager method) add_dataset() (ABXpy.h5tools.h52np.H52NP method) (ABXpy.h5tools.np2h5.NP2H5 method) add_subdataset() (ABXpy.h5tools.h52np.H52NP method) addChild() (ABXpy.misc.tinytree.Tree method) addChildrenFromList() (ABXpy.misc.tinytree.Tree method) analyze() (in module ABXpy.analyze) attrsToRoot() (ABXpy.misc.tinytree.Tree method)

B

B_filter() (ABXpy.sideop.filter_manager.FilterManager method) buffer_empty() (ABXpy.h5tools.h52np.H52NPbuffer method)

bundle_call_info() (ABXpy.dbfun.lookuptable_connector.LookupTableConnector method) by_filter() (ABXpy.sideop.filter_manager.FilterManager method)

C

check_Call() (ABXpy.dbfun.lookuptable_connector.LookupTableConnector method) check_extensions() (ABXpy.sideop.side_operations_manager.SideOperationsManager method) check_flatness() (ABXpy.dbfun.lookuptable_connector.LookupTableConnector method) check_Subscript() (ABXpy.dbfun.lookuptable_connector.LookupTableConnector method) chunk_size() (in module ABXpy.dbfun.dbfun_lookuptable) classify_ABX() (ABXpy.sideop.side_operations_manager.SideOperationsManager method) classify_by() (ABXpy.sideop.side_operations_manager.SideOperationsManager method) classify_generic() (ABXpy.sideop.filter_manager.FilterManager method) (ABXpy.sideop.regressor_manager.RegressorManager method) (ABXpy.sideop.side_operations_manager.SideOperationsManager method) classify_on_across_by() (ABXpy.sideop.side_operations_manager.SideOperationsManager method)

clear() (ABXpy.misc.tinytree.Tree method) collapse() (in module ABXpy.analyze) compress_index() (ABXpy.dbfun.dbfun_lookuptable.DBfun_LookupTable method) compute_distances() (in module ABXpy.distances.distances) compute_nb_levels() (ABXpy.task.Task method) compute_statistics() (ABXpy.task.Task method) constructFromList() (in module ABXpy.misc.tinytree) cosine_distance() (in module ABXpy.distances.metrics.cosine) count() (ABXpy.misc.tinytree.Tree method) create_distance_jobs() (in module ABXpy.distances.distances) current_tail() (ABXpy.h5tools.h52np.H52NPbuffer method)

D

dataset_empty() (ABXpy.h5tools.h52np.H52NPbuffer method) DBfun (class in ABXpy.dbfun.dbfun) DBfun_Column (class in ABXpy.dbfun.dbfun_column) DBfun_Compute (class in ABXpy.dbfun.dbfun_compute)

DBfun_LookupTable (class in ABXpy.dbfun.dbfun_lookuptable) delete() (ABXpy.h5tools.np2h5.NP2H5buffer method) display() (ABXpy.misc.progress_display.ProgressDisplay method) dump() (ABXpy.misc.tinytree.Tree method)

E

evaluate() (ABXpy.dbfun.dbfun.DBfun method) (ABXpy.dbfun.dbfun_column.DBfun_Column method) (ABXpy.dbfun.dbfun_compute.DBfun_Compute method) (ABXpy.dbfun.dbfun_lookuptable.DBfun_LookupTable method) evaluate_A() (ABXpy.sideop.side_operations_manager.SideOperationsManager method) evaluate_A_B_X() (ABXpy.sideop.side_operations_manager.SideOperationsManager method)

evaluate_ABX() (ABXpy.sideop.side_operations_manager.SideOperationsManager method) evaluate_B() (ABXpy.sideop.side_operations_manager.SideOperationsManager method) evaluate_by() (ABXpy.sideop.side_operations_manager.SideOperationsManager method) evaluate_generic() (ABXpy.sideop.side_operations_manager.SideOperationsManager method) evaluate_on_across_by() (ABXpy.sideop.side_operations_manager.SideOperationsManager method) evaluate_X() (ABXpy.sideop.side_operations_manager.SideOperationsManager method) extract_chunk() (ABXpy.h5tools.h5_handler.H5Handler method)

F

Features_Accessor (class in ABXpy.distances.distances) fetch_regressor_info() (ABXpy.sideop.regressor_manager.RegressorManager method) fill() (ABXpy.dbfun.dbfun_lookuptable.DBfun_LookupTable method) FilterManager (class in ABXpy.sideop.filter_manager) find() (ABXpy.h5tools.h5io.H5IO method) findAttr() (ABXpy.misc.tinytree.Tree method)

findBackwards() (ABXpy.misc.tinytree.Tree method) findChild() (ABXpy.misc.tinytree.Tree method) findForwards() (ABXpy.misc.tinytree.Tree method) findParent() (ABXpy.misc.tinytree.Tree method) fit_integer_type() (in module ABXpy.misc.type_fitting) flush() (ABXpy.h5tools.np2h5.NP2H5buffer method)

G

generate_triplets() (ABXpy.task.Task method) generic_filter() (ABXpy.sideop.filter_manager.FilterManager method) generic_visit() (ABXpy.dbfun.lookuptable_connector.LookupTableConnector method) get_array() (in module ABXpy.h5tools.h5io) get_dtype() (in module ABXpy.dbfun.dbfun_lookuptable) (in module ABXpy.h5tools.h5io) get_features_from_raw() (ABXpy.distances.distances.Features_Accessor method)

get_features_from_splitted() (ABXpy.distances.distances.Features_Accessor method) get_keys() (ABXpy.dbfun.dbfun_lookuptable.DBfun_LookupTable method) get_regressor_info() (ABXpy.sideop.regressor_manager.RegressorManager method) getDepth() (ABXpy.misc.tinytree.Tree method) getNext() (ABXpy.misc.tinytree.Tree method) getPrevious() (ABXpy.misc.tinytree.Tree method) getRoot() (ABXpy.misc.tinytree.Tree method)

H

H52NP (class in ABXpy.h5tools.h52np) H52NPbuffer (class in ABXpy.h5tools.h52np) H5dataset2NPbuffer (class in ABXpy.h5tools.h52np)

H5Handler (class in ABXpy.h5tools.h5_handler) H5IO (class in ABXpy.h5tools.h5io) H5TMP (class in ABXpy.h5tools.h5_handler) hypergeometric_sample() (in module ABXpy.sampling.sampler)

I

IncrementalSampler (class in ABXpy.sampling.sampler) index() (ABXpy.misc.tinytree.Tree method) initialize_output_dsets() (ABXpy.dbfun.dbfun_lookuptable.DBfun_LookupTable method) inject() (ABXpy.misc.tinytree.Tree method)

iscomplete() (ABXpy.h5tools.np2h5.NP2H5buffer method) isDescendantOf() (ABXpy.misc.tinytree.Tree method) isempty() (ABXpy.h5tools.h52np.H52NPbuffer method) isSiblingOf() (ABXpy.misc.tinytree.Tree method)

K

Knuth_sampling() (in module ABXpy.sampling.sampler)

L

load() (ABXpy.dbfun.dbfun_lookuptable.DBfun_LookupTable method) (in module ABXpy.database.database) load_aux_dbs() (in module ABXpy.database.database)

load_data() (ABXpy.dbfun.dbfun_lookuptable.DBfun_LookupTable method) load_metadata() (ABXpy.dbfun.dbfun_lookuptable.DBfun_LookupTable method) LookupTableConnector (class in ABXpy.dbfun.lookuptable_connector)

M

main() (in module ABXpy.analyze) (in module ABXpy.score) (in module ABXpy.task) module ABXpy.__init__ ABXpy.analyze ABXpy.database ABXpy.database.database ABXpy.dbfun ABXpy.dbfun.dbfun ABXpy.dbfun.dbfun_column ABXpy.dbfun.dbfun_compute ABXpy.dbfun.dbfun_lookuptable ABXpy.dbfun.lookuptable_connector ABXpy.distances ABXpy.distances.distances ABXpy.distances.metrics ABXpy.distances.metrics.cosine ABXpy.h5tools ABXpy.h5tools.h52np ABXpy.h5tools.h5_handler ABXpy.h5tools.h5io ABXpy.h5tools.np2h5 ABXpy.misc ABXpy.misc.progress_display ABXpy.misc.tinytree ABXpy.misc.type_fitting ABXpy.sampling ABXpy.sampling.sampler ABXpy.score ABXpy.sideop ABXpy.sideop.filter_manager ABXpy.sideop.regressor_manager ABXpy.sideop.side_operations_manager ABXpy.task

N

nameVisitor (class in ABXpy.dbfun.dbfun_compute) nb_lines() (in module ABXpy.h5tools.np2h5) nb_lower_than() (ABXpy.h5tools.h52np.H52NPbuffer method) next() (ABXpy.sampling.sampler.IncrementalSampler method)

normalize_cosine_distance() (in module ABXpy.distances.metrics.cosine) NP2H5 (class in ABXpy.h5tools.np2h5) NP2H5buffer (class in ABXpy.h5tools.np2h5) npdecode() (in module ABXpy.analyze)

O

on_across_by_filter() (ABXpy.sideop.filter_manager.FilterManager method) on_across_from_key() (in module ABXpy.task) on_across_triplets() (ABXpy.task.Task method)

output_specs() (ABXpy.dbfun.dbfun.DBfun method) (ABXpy.dbfun.dbfun_column.DBfun_Column method) (ABXpy.dbfun.dbfun_compute.DBfun_Compute method) (ABXpy.dbfun.dbfun_lookuptable.DBfun_LookupTable method)

P

pack() (ABXpy.dbfun.dbfun_lookuptable.DBfun_LookupTable method) parse() (ABXpy.dbfun.dbfun_compute.DBfun_Compute method) parse_args() (in module ABXpy.analyze) parse_arguments() (in module ABXpy.task) parse_extended_column() (ABXpy.sideop.side_operations_manager.SideOperationsManager method) parse_extended_columns() (ABXpy.sideop.side_operations_manager.SideOperationsManager method) pathFromRoot() (ABXpy.misc.tinytree.Tree method)

pathToRoot() (ABXpy.misc.tinytree.Tree method) postOrder() (ABXpy.misc.tinytree.Tree method) preOrder() (ABXpy.misc.tinytree.Tree method) print_stats() (ABXpy.task.Task method) print_stats_to_stream() (ABXpy.task.Task method) process_with() (ABXpy.dbfun.dbfun_compute.DBfun_Compute method) ProgressDisplay (class in ABXpy.misc.progress_display)

R

read() (ABXpy.h5tools.h52np.H52NPbuffer method) (ABXpy.h5tools.h52np.H5dataset2NPbuffer method) (ABXpy.h5tools.h5io.H5IO method) read_table() (in module ABXpy.database.database) refill_buffer() (ABXpy.h5tools.h52np.H52NPbuffer method) (ABXpy.h5tools.h52np.H5dataset2NPbuffer method) register() (ABXpy.misc.tinytree.Tree method)

RegressorManager (class in ABXpy.sideop.regressor_manager) rejection_sampling() (in module ABXpy.sampling.sampler) remove() (ABXpy.misc.tinytree.Tree method) reparent() (ABXpy.misc.tinytree.Tree method) replace() (ABXpy.misc.tinytree.Tree method) result_generator() (in module ABXpy.sideop.side_operations_manager) run_distance_job() (in module ABXpy.distances.distances)

S

sample() (ABXpy.sampling.sampler.IncrementalSampler method) sample_without_replacement() (in module ABXpy.sampling.sampler) score() (in module ABXpy.score) set_A_B_X_context() (ABXpy.sideop.side_operations_manager.SideOperationsManager method) set_A_regressors() (ABXpy.sideop.regressor_manager.RegressorManager method) set_ABX_context() (ABXpy.sideop.side_operations_manager.SideOperationsManager method) set_ABX_regressors() (ABXpy.sideop.regressor_manager.RegressorManager method) set_B_regressors() (ABXpy.sideop.regressor_manager.RegressorManager method) set_by_context() (ABXpy.sideop.side_operations_manager.SideOperationsManager method) set_by_regressors() (ABXpy.sideop.regressor_manager.RegressorManager method) set_generic_context() (ABXpy.sideop.side_operations_manager.SideOperationsManager method)

set_on_across_by_regressors() (ABXpy.sideop.regressor_manager.RegressorManager method) set_on_across_context() (ABXpy.sideop.side_operations_manager.SideOperationsManager method) set_X_regressors() (ABXpy.sideop.regressor_manager.RegressorManager method) siblings() (ABXpy.misc.tinytree.Tree method) SideOperationsManager (class in ABXpy.sideop.side_operations_manager) simple_sample() (ABXpy.sampling.sampler.IncrementalSampler method) singleton_filter() (in module ABXpy.sideop.filter_manager) singleton_result_generator() (in module ABXpy.sideop.side_operations_manager) sort() (ABXpy.h5tools.h5_handler.H5Handler method) (ABXpy.h5tools.h5io.H5IO method) sort_and_threshold() (in module ABXpy.task) sort_pairs() (in module ABXpy.task)

T

Task (class in ABXpy.task) test() (in module ABXpy.h5tools.h5_handler)

test_h5io() (in module ABXpy.h5tools.h5io) Tree (class in ABXpy.misc.tinytree) treeProp() (ABXpy.misc.tinytree.Tree static method)

U

unique() (in module ABXpy.analyze)

unique_rows() (in module ABXpy.analyze) update() (ABXpy.misc.progress_display.ProgressDisplay method)

V

vectorial_filter() (in module ABXpy.sideop.filter_manager) visit_Call() (ABXpy.dbfun.lookuptable_connector.LookupTableConnector method)

visit_Name() (ABXpy.dbfun.dbfun_compute.nameVisitor method) visit_Subscript() (ABXpy.dbfun.lookuptable_connector.LookupTableConnector method)

W

worker() (in module ABXpy.distances.distances) write() (ABXpy.dbfun.dbfun_lookuptable.DBfun_LookupTable method) (ABXpy.h5tools.h5io.H5IO method) (ABXpy.h5tools.np2h5.NP2H5buffer method)

X

X_filter() (ABXpy.sideop.filter_manager.FilterManager method)